Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs12486253 chr3:161005044 G/A 7.22E-5 296 27.78 21.68 18.25 KM Plot
CESC rs12515255 chr5:126127997 G/T 0 295 21.23 20.7 1.73 KM Plot
CESC rs12518228 chr5:126095379 A/G 0 290 21.2 20.92 1.73 KM Plot
CESC rs12518331 chr5:126093846 T/G 0 291 21.2 21.07 1.73 KM Plot
CESC rs12538107 chr7:123207609 A/G 4.97E-6 288 22.83 18.07 3.72 KM Plot
CESC rs12539600 chr7:123091353 G/C 2.56E-6 293 23.42 18.4 3.72 KM Plot
CESC rs12562546 chr1:59088683 A/G 3.59E-5 295 21.23 24.6 13.8 KM Plot
CESC rs12564701 chr1:59089016 C/T 3.59E-5 295 21.23 24.6 13.8 KM Plot
CESC rs12575377 chr11:33056092 T/C 8.43E-7 290 22.88 21.07 1.73 KM Plot
CESC rs12610845 chr19:18772573 C/T 9.24E-5 299 25.77 21.27 13.15 KM Plot
CESC rs12627374 chr21:42837691 A/G 9.26E-6 299 4.2 27.63 21.2 KM Plot
CESC rs12633554 chr3:100374121 C/T 1.28E-5 293 22.4 19.4 12.05 KM Plot
CESC rs12636989 chr3:100374073 T/C 1.28E-5 293 22.4 19.4 12.05 KM Plot
CESC rs12669325 chr7:889358 T/C 0 288 23.3 18 3.4 KM Plot
CESC rs12676285 chr8:144399147 G/T 4.77E-5 296 26.63 21.15 17.32 KM Plot